AI & ML interests
None defined yet.
Organization Card
NOTE: We are heavily revamping PSALM. Current progress at the GitHub repo
Cite
If you find PSALM useful in your research, please cite the following paper:
@article {sarkarkrishnan2024psalm,
author = {Sarkar, Arpan and Krishnan, Kumaresh and Eddy, Sean R},
title = {Protein Sequence Domain Annotation using Language Models},
year = {2024},
URL = {https://www.biorxiv.org/content/10.1101/2024.06.04.596712v2},
journal = {bioRxiv}
}
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ProteinSequenceAnnotation/esm2_t33_650M_PFS90_clean
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ProteinSequenceAnnotation/esm2_t33_650M_PFS90_leaky
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ProteinSequenceAnnotation/esm2_t33_650M_PFS90_leaky10x
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ProteinSequenceAnnotation/esm2_t33_650M_UR50_190K_steps
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ProteinSequenceAnnotation/esm2_t33_650M_PFS90_clean
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ProteinSequenceAnnotation/esm2_t33_650M_PFS90_leaky
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ProteinSequenceAnnotation/esm2_t33_650M_PFS90_leaky10x
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ProteinSequenceAnnotation/esm2_t33_650M_UR50_190K_steps
0.7B • Updated • 38
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ProteinSequenceAnnotation/esm2_t33_650M_UR50_190K_steps
0.7B • Updated • 38
ProteinSequenceAnnotation/esm2_t33_650M_PFS90_leaky10x
0.7B • Updated • 22
ProteinSequenceAnnotation/PSALM-2-seed
0.8B • Updated • 21
ProteinSequenceAnnotation/PSALM-2
0.8B • Updated • 37
ProteinSequenceAnnotation/esm2_t33_650M_PFS90_leaky
0.7B • Updated • 24
ProteinSequenceAnnotation/esm2_t33_650M_PFS90_clean
0.7B • Updated • 21
ProteinSequenceAnnotation/PSALM-1b-family
0.2B • Updated • 22
ProteinSequenceAnnotation/PSALM-1b-clan
69M • Updated • 18
ProteinSequenceAnnotation/PSALM-1-family
Token Classification • 0.2B • Updated • 37
ProteinSequenceAnnotation/PSALM-1-clan
Token Classification • 69M • Updated • 32